- Scientific Name
- Salmonella enterica subsp. diarizonae
- Common Names
- Salmonella cholerae-suis subsp. diarizonae, Salmonella choleraesuis subsp. diarizonae, Salmonella enterica IIIb, Salmonella enterica serovar IIIb, Salmonella enterica subsp. IIIb, Salmonella enterica subsp. Subsp. IIIb
- Bioproject
- PRJCA039050
- Biosample
- SAMC5009131
- Accession No.
- GWHGHTW00000000.1
- GWH reannotation accession
- GWHRA_GHTW00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Comprehensive Laboratory, Guangdong Provincial Institute of Public Health
- Contact
- Zhe Liu, lzhwin@foxmail.com
- Sequence author(s)
- Lebin Su, Yingyu Liang, Xiachen Xian, Haoyuan Lun, Sara Aiman
- Released Date
- 2025-10-07
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes 3.13.0
- Sequencing & coverage
- MGI Tech 100
- Download
- DNA Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHGHTW00000000.1 | GWHRA_GHTW00000000.1 | Salmonella_22SAL094.pri | Draft genome in contig level | 2025-10-07 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,382,015 |
| GC content | 51.35% |
| Contig sequence No. | 63 |
| Maximum contig sequence length (bp) | 598,157 |
| Minimum contig sequence length (bp) | 1,051 |
| Average contig sequence length (bp) | 85,429 |
| Contig N50 (bp) | 214,892 |
| Contig N90 (bp) | 55,796 |
Statistics of Genome Assembly
| Genome size (bp) | 5,382,015 |
| GC content | 51.35% |
| Contig sequence No. | 63 |
| Maximum contig sequence length (bp) | 598,157 |
| Minimum contig sequence length (bp) | 1,051 |
| Average contig sequence length (bp) | 85,429 |
| Contig N50 (bp) | 214,892 |
| Contig N90 (bp) | 55,796 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4,936 | 69 | 3 | 6 | 219 | 83 | 5,316 |