- Scientific Name
- Salmonella enterica subsp. enterica serovar Hvittingfoss
- Common Names
- -
- Bioproject
- PRJCA039050
- Biosample
- SAMC5009293
- Accession No.
- GWHGIAC00000000.1
- GWH reannotation accession
- GWHRA_GIAC00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Comprehensive Laboratory, Guangdong Provincial Institute of Public Health
- Contact
- Zhe Liu, lzhwin@foxmail.com
- Sequence author(s)
- Lebin Su, Yingyu Liang, Xiachen Xian, Haoyuan Lun, Sara Aiman
- Released Date
- 2025-10-08
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes 3.13.0
- Sequencing & coverage
- MGI Tech 100
- Download
- DNA Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHGIAC00000000.1 | GWHRA_GIAC00000000.1 | Salmonella_24CF1005.pri | Draft genome in contig level | 2025-10-08 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,798,498 |
| GC content | 52.24% |
| Contig sequence No. | 40 |
| Maximum contig sequence length (bp) | 988,101 |
| Minimum contig sequence length (bp) | 1,040 |
| Average contig sequence length (bp) | 119,962 |
| Contig N50 (bp) | 308,147 |
| Contig N90 (bp) | 94,526 |
Statistics of Genome Assembly
| Genome size (bp) | 4,798,498 |
| GC content | 52.24% |
| Contig sequence No. | 40 |
| Maximum contig sequence length (bp) | 988,101 |
| Minimum contig sequence length (bp) | 1,040 |
| Average contig sequence length (bp) | 119,962 |
| Contig N50 (bp) | 308,147 |
| Contig N90 (bp) | 94,526 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4,449 | 68 | 6 | 8 | 121 | 61 | 4,713 |