- Scientific Name
- Streptococcus pseudopneumoniae
- Common Names
- -
- Bioproject
- PRJNA789526
- Biosample
- SAMN24116475
- Accession No.
- GCA_021294795.1
- RefSeq Accession No.
- GCF_021294795.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Karolinska Institutet
- Released Date
- 2024-02-21
- NCBI Released Date
- 2021-12-27
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_021294795.1 | GCF_021294795.1 | identical | ASM2129479v1 | Draft genome in chromosome level | 2021-12-27 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF |
Statistics of Genome Assembly
| Genome size (bp) | 2,184,713 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 138 |
| GC content | 40 |
| Scaffold sequence No. | 138 |
| Scaffold L50 | 14 |
| Scaffold N50 (bp) | 49,687 |
| Scaffold N75 (bp) | 21,179 |
| Scaffold N90 (bp) | 12,064 |
| Contig sequence No. | 150 |
| Contig L50 | 14 |
| Contig N50 (bp) | 47,985 |
| Unique components No. | 138 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 12 |
| Ns gap sequence region length (bp) | 1,200 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 2051 | 44 | 3 | 0 | 195 | 3 | 2296 |
Statistics of Genome Assembly
| Genome size (bp) | 2,184,713 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 138 |
| GC content | 40 |
| Scaffold sequence No. | 138 |
| Scaffold L50 | 14 |
| Scaffold N50 (bp) | 49,687 |
| Scaffold N75 (bp) | 21,179 |
| Scaffold N90 (bp) | 12,064 |
| Contig sequence No. | 150 |
| Contig L50 | 14 |
| Contig N50 (bp) | 47,985 |
| Unique components No. | 138 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 12 |
| Ns gap sequence region length (bp) | 1,200 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 2024 | 44 | 3 | asse0 | 222 | 3 | 2296 |