- Scientific Name
- Salmonella enterica subsp. enterica serovar Typhi
- Common Names
- Bacillus typhi, Bacterium (subgen. Eberthella) typhi, Salmonella choleraesuis serovar Typhi, Salmonella choleraesuis typhi, Salmonella enterica serotype Typhi, Salmonella enterica serovar Typhi, Salmonella enterica ser. typhi, Salmonella typhi
- Bioproject
- PRJEB3215
- Biosample
- SAMEA2162371
- Accession No.
- GCA_001048435.1
- RefSeq Accession No.
- GCF_001048435.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- SC
- Released Date
- 2025-03-28
- NCBI Released Date
- 2015-06-30
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001048435.1 | GCF_001048435.1 | identical | 10562_2#10 | Draft genome in chromosome level | 2015-06-30 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,753,037 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 55 |
| GC content | 52 |
| Scaffold sequence No. | 55 |
| Scaffold L50 | 9 |
| Scaffold N50 (bp) | 172,003 |
| Scaffold N75 (bp) | 135,309 |
| Scaffold N90 (bp) | 60,588 |
| Contig sequence No. | 71 |
| Contig L50 | 12 |
| Contig N50 (bp) | 144,707 |
| Unique components No. | 55 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 16 |
| Ns gap sequence region length (bp) | 4,444 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4555 | 68 | 0 | 0 | 0 | 1 | 4624 |
Statistics of Genome Assembly
| Genome size (bp) | 4,753,037 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 55 |
| GC content | 52 |
| Scaffold sequence No. | 55 |
| Scaffold L50 | 9 |
| Scaffold N50 (bp) | 172,003 |
| Scaffold N75 (bp) | 135,309 |
| Scaffold N90 (bp) | 60,588 |
| Contig sequence No. | 71 |
| Contig L50 | 12 |
| Contig N50 (bp) | 144,707 |
| Unique components No. | 55 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 16 |
| Ns gap sequence region length (bp) | 4,444 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4268 | 67 | 5 | asse6 | 328 | 3 | 4677 |