- Scientific Name
- Streptococcus pseudopneumoniae
- Common Names
- -
- Bioproject
- PRJNA267549
- Biosample
- SAMN03197355
- Accession No.
- GCA_001070715.1
- RefSeq Accession No.
- GCF_001070715.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- University of Washington
- Released Date
- 2024-01-02
- NCBI Released Date
- 2015-07-10
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001070715.1 | GCF_001070715.1 | identical | ASM107071v1 | Draft genome in chromosome level | 2015-07-10 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,123,243 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 145 |
| GC content | 39.5 |
| Scaffold sequence No. | 145 |
| Scaffold L50 | 21 |
| Scaffold N50 (bp) | 28,377 |
| Scaffold N75 (bp) | 14,000 |
| Scaffold N90 (bp) | 8,609 |
| Contig sequence No. | 150 |
| Contig L50 | 21 |
| Contig N50 (bp) | 28,377 |
| Unique components No. | 145 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 5 |
| Ns gap sequence region length (bp) | 418 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 2,123,243 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 145 |
| GC content | 39.5 |
| Scaffold sequence No. | 145 |
| Scaffold L50 | 21 |
| Scaffold N50 (bp) | 28,377 |
| Scaffold N75 (bp) | 14,000 |
| Scaffold N90 (bp) | 8,609 |
| Contig sequence No. | 150 |
| Contig L50 | 21 |
| Contig N50 (bp) | 28,377 |
| Unique components No. | 145 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 5 |
| Ns gap sequence region length (bp) | 418 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 2016 | 30 | 3 | asse0 | 114 | 3 | 2166 |