Genome Warehouse

Scientific Name: Streptococcus pseudopneumoniae
Common Names: -
Bioproject: PRJNA267549
Biosample: SAMN03198051
Accession No.: GCA_001074565.1
RefSeq Accession No.: GCF_001074565.1
RefSeq vs GenBank similarity: identical
Source: NCBI
External Links: NCBI
Submitter Organization: University of Washington
Released Date: 2023-12-03
NCBI Released Date: 2015-07-10
Assembly Level: Draft genome in scaffold level
Genome Representation: Full Genome
Download: DNA
RefSeq Download: RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
Publication(s)

History

Assembly Accession	RefSeq Accession	RefSeq vs GenBank similarity	Assembly Name	Assembly Level	NCBI Released Date	Download Files
GCA_001074565.1	GCF_001074565.1	identical	ASM107456v1	Draft genome in chromosome level	2015-07-10	DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

GenBank
RefSeq

Statistics of Genome Assembly

Genome size (bp)	2,085,268
Chromosomes, organellas and plasmids sequnece No.	0
Genome sequence No.	72
Scaffold sequence No.	72
Scaffold L50	8
Scaffold N50 (bp)	86,742
Scaffold N75 (bp)	39,570
Scaffold N90 (bp)	17,440
Contig sequence No.	73
Contig L50	9
Contig N50 (bp)	74,837
Unique components No.	72
No. of regions with alternate loci or patches	0
Ns gap sequence No. (bp)	1
Ns gap sequence region length (bp)	100
Gaps No. between scaffolds	0

Statistics of Genome Assembly

Genome size (bp)	2,085,268
Chromosomes, organellas and plasmids sequnece No.	0
Genome sequence No.	72
GC content	40.5
Scaffold sequence No.	72
Scaffold L50	8
Scaffold N50 (bp)	86,742
Scaffold N75 (bp)	39,570
Scaffold N90 (bp)	17,440
Contig sequence No.	73
Contig L50	9
Contig N50 (bp)	74,837
Unique components No.	72
No. of regions with alternate loci or patches	0
Ns gap sequence No. (bp)	1
Ns gap sequence region length (bp)	100
Gaps No. between scaffolds	0

Annotation of Whole Genome Assembly

asse

	Protein	trna	rrna	ncrna	Pseudogene	Others	Total
Total	1994	46	3	0	60	3	2106