- Scientific Name
- Streptococcus mutans
- Common Names
- -
- Bioproject
- PRJNA880610
- Biosample
- SAMN31322917
- Accession No.
- GCA_028325945.1
- RefSeq Accession No.
- GCF_028325945.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Icahn School of Medicine
- Released Date
- 2023-11-20
- NCBI Released Date
- 2023-01-30
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_028325945.1 | GCF_028325945.1 | identical | ASM2832594v1 | Draft genome in chromosome level | 2023-01-30 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,997,461 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 22 |
| GC content | 36.5 |
| Scaffold sequence No. | 22 |
| Scaffold L50 | 3 |
| Scaffold N50 (bp) | 327,212 |
| Scaffold N75 (bp) | 111,172 |
| Scaffold N90 (bp) | 81,918 |
| Contig sequence No. | 30 |
| Contig L50 | 5 |
| Contig N50 (bp) | 134,495 |
| Unique components No. | 22 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 8 |
| Ns gap sequence region length (bp) | 772 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 1852 | 41 | 5 | 1 | 56 | 3 | 1958 |
Statistics of Genome Assembly
| Genome size (bp) | 1,997,461 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 22 |
| GC content | 36.5 |
| Scaffold sequence No. | 22 |
| Scaffold L50 | 3 |
| Scaffold N50 (bp) | 327,212 |
| Scaffold N75 (bp) | 111,172 |
| Scaffold N90 (bp) | 81,918 |
| Contig sequence No. | 30 |
| Contig L50 | 5 |
| Contig N50 (bp) | 134,495 |
| Unique components No. | 22 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 8 |
| Ns gap sequence region length (bp) | 772 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 1844 | 41 | 5 | asse1 | 64 | 3 | 1958 |