- Scientific Name
- Pseudomonas savastanoi pv. glycinea
- Common Names
- Pseudomonas syringae glycinea, Pseudomonas syringae (PV. GLYCINEA)
- Bioproject
- PRJNA284855
- Biosample
- SAMN03737225
- Accession No.
- GCA_001294195.1
- RefSeq Accession No.
- GCF_001294195.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- University of Toronto
- Released Date
- 2023-12-03
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001294195.1 | GCF_001294195.1 | identical | PgyKN44 | Draft genome in scaffold level | 2015-09-18 | DNA GFF Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 6,058,211 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 215 |
| GC content | 58 |
| Scaffold sequence No. | 215 |
| Scaffold L50 | 24 |
| Scaffold N50 (bp) | 66,808 |
| Scaffold N75 (bp) | 40,570 |
| Scaffold N90 (bp) | 16,977 |
| Contig sequence No. | 446 |
| Contig L50 | 50 |
| Contig N50 (bp) | 34,932 |
| Unique components No. | 215 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 231 |
| Ns gap sequence region length (bp) | 146,388 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5261 | 0 | 0 | 0 | 0 | 0 | 5261 |
Statistics of Genome Assembly
| Genome size (bp) | 6,058,211 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 215 |
| GC content | 58 |
| Scaffold sequence No. | 215 |
| Scaffold L50 | 24 |
| Scaffold N50 (bp) | 66,808 |
| Scaffold N75 (bp) | 40,570 |
| Scaffold N90 (bp) | 16,977 |
| Contig sequence No. | 446 |
| Contig L50 | 50 |
| Contig N50 (bp) | 34,932 |
| Unique components No. | 215 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 231 |
| Ns gap sequence region length (bp) | 146,388 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5080 | 32 | 3 | asse1 | 365 | 3 | 5484 |