- Scientific Name
- Pseudomonas savastanoi pv. glycinea
- Common Names
- Pseudomonas syringae glycinea, Pseudomonas syringae (PV. GLYCINEA)
- Bioproject
- PRJNA284853
- Biosample
- SAMN03837779
- Accession No.
- GCA_001294265.1
- RefSeq Accession No.
- GCF_001294265.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- University of Toronto
- Released Date
- 2025-04-30
- NCBI Released Date
- 2015-09-18
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001294265.1 | GCF_001294265.1 | identical | Pseudomonas syringae pv. glycinea BR1 | Draft genome in chromosome level | 2015-09-18 | DNA GFF CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 6,173,154 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 127 |
| GC content | 58 |
| Scaffold sequence No. | 127 |
| Scaffold L50 | 12 |
| Scaffold N50 (bp) | 223,334 |
| Scaffold N75 (bp) | 92,693 |
| Scaffold N90 (bp) | 45,526 |
| Contig sequence No. | 382 |
| Contig L50 | 46 |
| Contig N50 (bp) | 42,331 |
| Unique components No. | 127 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 255 |
| Ns gap sequence region length (bp) | 205,912 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5503 | 0 | 0 | 0 | 0 | 0 | 5503 |
Statistics of Genome Assembly
| Genome size (bp) | 6,173,154 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 127 |
| GC content | 58 |
| Scaffold sequence No. | 127 |
| Scaffold L50 | 12 |
| Scaffold N50 (bp) | 223,334 |
| Scaffold N75 (bp) | 92,693 |
| Scaffold N90 (bp) | 45,526 |
| Contig sequence No. | 382 |
| Contig L50 | 46 |
| Contig N50 (bp) | 42,331 |
| Unique components No. | 127 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 255 |
| Ns gap sequence region length (bp) | 205,912 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5167 | 37 | 3 | asse1 | 358 | 3 | 5569 |