- Scientific Name
- Lentinula edodes
- Common Names
- shiitake mushroom; Agaricus edodes, Lentinus edodes
- Bioproject
- PRJNA278395
- Biosample
- SAMN03418238
- Accession No.
- GCA_001700625.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Huazhong Agricultural University
- Released Date
- 2025-02-23
- NCBI Released Date
- 2016-08-08
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001700625.1 | - | - | ASM170062v1 | Draft genome in chromosome level | 2016-08-08 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 41,818,685 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 335 |
| GC content | 46 |
| Scaffold sequence No. | 335 |
| Scaffold L50 | 41 |
| Scaffold N50 (bp) | 300,654 |
| Scaffold N75 (bp) | 172,980 |
| Scaffold N90 (bp) | 83,563 |
| Contig sequence No. | 2,104 |
| Contig L50 | 104 |
| Contig N50 (bp) | 106,379 |
| Unique components No. | 2,104 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 1,769 |
| Ns gap sequence region length (bp) | 1,052,252 |
| Gaps No. between scaffolds | 0 |