- Scientific Name
- Nitrosopumilaceae archaeon
- Common Names
- -
- Bioproject
- PRJEB29556
- Biosample
- SAMEA5126984
- Accession No.
- GCA_900620265.3
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- UNIVERSITY OF VIENNA
- Released Date
- 2023-12-04
- NCBI Released Date
- 2023-05-28
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_900620265.3 | - | - | ASM90062026v3 | Draft genome in chromosome level | 2023-05-28 | DNA GFF RNA CDS Protein |
| GCA_900620265.2 | - | - | Arenicellales bacterium IbO2 | Complete genome | 2022-09-16 | DNA GFF RNA CDS Protein |
| GCA_900620265.1 | GCF_900620265.1 | identical | Nitrosopumilaceae_archaeon_O2_Ibasta | Draft genome in chromosome level | 2019-02-12 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Contig L50 | 17 |
| Contig N50 (bp) | 33,142 |
| Contig sequence No. | 126 |
| Gaps No. between scaffolds | 0 |
| GC content | 65 |
| Genome sequence No. | 113 |
| Genome size (bp) | 1,996,680 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 13 |
| Ns gap sequence region length (bp) | 130 |
| Scaffold L50 | 17 |
| Scaffold N50 (bp) | 35,099 |
| Scaffold N75 (bp) | 16,172 |
| Scaffold N90 (bp) | 7,102 |
| Scaffold sequence No. | 113 |
| Unique components No. | 113 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 2244 | 42 | 3 | 2 | 13 | 0 | 2304 |