- Scientific Name
- Pseudomonas savastanoi pv. glycinea
- Common Names
- Pseudomonas syringae glycinea, Pseudomonas syringae (PV. GLYCINEA)
- Bioproject
- PRJNA292453
- Biosample
- SAMN03976247
- Accession No.
- GCA_001400375.1
- RefSeq Accession No.
- GCF_001400375.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- University of Toronto
- Released Date
- 2023-12-18
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001400375.1 | GCF_001400375.1 | identical | PgyICMP2189 | Draft genome in scaffold level | 2015-10-20 | DNA GFF Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,983,516 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 430 |
| GC content | 58 |
| Scaffold sequence No. | 430 |
| Scaffold L50 | 48 |
| Scaffold N50 (bp) | 37,582 |
| Scaffold N75 (bp) | 20,134 |
| Scaffold N90 (bp) | 8,690 |
| Contig sequence No. | 549 |
| Contig L50 | 70 |
| Contig N50 (bp) | 26,618 |
| Unique components No. | 430 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 119 |
| Ns gap sequence region length (bp) | 4,021 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5598 | 0 | 0 | 0 | 0 | 0 | 5598 |
Statistics of Genome Assembly
| Genome size (bp) | 5,983,516 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 430 |
| GC content | 58 |
| Scaffold sequence No. | 430 |
| Scaffold L50 | 48 |
| Scaffold N50 (bp) | 37,582 |
| Scaffold N75 (bp) | 20,134 |
| Scaffold N90 (bp) | 8,690 |
| Contig sequence No. | 549 |
| Contig L50 | 70 |
| Contig N50 (bp) | 26,618 |
| Unique components No. | 430 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 119 |
| Ns gap sequence region length (bp) | 4,021 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5156 | 46 | 3 | asse1 | 396 | 3 | 5605 |