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  • Roseibium aggregatum
  • L.aggregataCECT4801_Spades_Prokka
    • Scientific Name
    Roseibium aggregatum
    Common Names
    Stappia aggregata, Agrobacterium aggregatum, Labrenzia aggregata
    Bioproject
    PRJEB10003
    Biosample
    SAMEA3492688
    Accession No.
    GCA_001403915.1
    RefSeq Accession No.
    GCF_001403915.1
    RefSeq vs GenBank similarity
    identical
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    UVEG
    Released Date
    2025-03-29
    NCBI Released Date
    2015-09-28
    Assembly Level
    Draft genome in scaffold level
    Genome Representation
    Full Genome
    Download
    DNA GFF RNA CDS Protein
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_001403915.1 GCF_001403915.1 identical L.aggregataCECT4801_Spades_Prokka Draft genome in chromosome level 2015-09-28 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 6,696,127
    Chromosomes, organellas and plasmids sequnece No. 0
    Genome sequence No. 39
    GC content 59
    Scaffold sequence No. 39
    Scaffold L50 2
    Scaffold N50 (bp) 1,997,998
    Scaffold N75 (bp) 716,327
    Scaffold N90 (bp) 303,309
    Contig sequence No. 40
    Contig L50 2
    Contig N50 (bp) 1,997,998
    Unique components No. 39
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 1
    Ns gap sequence region length (bp) 832
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    Protein trna rrna ncrna Pseudogene Others Total
    Total 6167 48 4 0 0 0 6219

    Statistics of Genome Assembly

    Genome size (bp) 6,696,127
    Chromosomes, organellas and plasmids sequnece No. 0
    Genome sequence No. 39
    GC content 59
    Scaffold sequence No. 39
    Scaffold L50 2
    Scaffold N50 (bp) 1,997,998
    Scaffold N75 (bp) 716,327
    Scaffold N90 (bp) 303,309
    Contig sequence No. 40
    Contig L50 2
    Contig N50 (bp) 1,997,998
    Unique components No. 39
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 1
    Ns gap sequence region length (bp) 832
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 6097 46 31 37 3 6187