- Scientific Name
- Lentinula edodes
- Common Names
- shiitake mushroom; Agaricus edodes, Lentinus edodes
- Bioproject
- PRJNA356792
- Biosample
- SAMN06127449
- Accession No.
- GCA_002000105.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Shanghai Academy of Agricultural Sciences
- Released Date
- 2023-11-07
- NCBI Released Date
- 2017-02-13
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_002000105.1 | - | - | ASM200010v1 | Draft genome in chromosome level | 2017-02-13 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 40,928,581 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 3,043 |
| Scaffold sequence No. | 3,043 |
| Scaffold L50 | 179 |
| Scaffold N50 (bp) | 61,248 |
| Scaffold N75 (bp) | 24,019 |
| Scaffold N90 (bp) | 6,709 |
| Contig sequence No. | 3,081 |
| Contig L50 | 183 |
| Contig N50 (bp) | 60,178 |
| Unique components No. | 3,043 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 38 |
| Ns gap sequence region length (bp) | 558 |
| Gaps No. between scaffolds | 0 |