- Scientific Name
- Lentinula edodes
- Common Names
- shiitake mushroom; Agaricus edodes, Lentinus edodes
- Bioproject
- PRJDB4944
- Biosample
- SAMD00054105
- Accession No.
- GCA_002003045.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Iwate Biotechnology Research Center
- Released Date
- 2023-11-07
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF Protein
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_002003045.1 | - | - | Lened_assembly01 | Draft genome in scaffold level | 2017-02-02 | DNA GFF Protein |
Statistics of Genome Assembly
| Genome size (bp) | 39,922,873 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 1,951 |
| Scaffold sequence No. | 1,951 |
| Scaffold L50 | 109 |
| Scaffold N50 (bp) | 102,974 |
| Scaffold N75 (bp) | 44,486 |
| Scaffold N90 (bp) | 14,634 |
| Contig sequence No. | 3,491 |
| Contig L50 | 245 |
| Contig N50 (bp) | 44,704 |
| Unique components No. | 1,951 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 1,540 |
| Ns gap sequence region length (bp) | 981,442 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 12051 | 0 | 0 | 0 | 0 | 0 | 12051 |