- Scientific Name
- Sphingobium sp. TKS
- Common Names
- -
- Bioproject
- PRJNA195946
- Biosample
- SAMN04497510
- Accession No.
- GCA_001563265.1
- RefSeq Accession No.
- GCF_001563265.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Graduate School of Life Sciences, Tohoku University
- Released Date
- 2025-04-30
- NCBI Released Date
- 2016-02-18
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001563265.1 | GCF_001563265.1 | identical | ASM156326v1 | Draft genome in contig level | 2016-02-18 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 6,228,879 |
| Chromosomes, organellas and plasmids sequnece No. | 11 |
| Genome sequence No. | 11 |
| GC content | 63 |
| Scaffold sequence No. | 11 |
| Scaffold L50 | 1 |
| Scaffold N50 (bp) | 4,249,857 |
| Scaffold N75 (bp) | 989,120 |
| Scaffold N90 (bp) | 520,614 |
| Unique components No. | 11 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 0 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5987 | 54 | 9 | 0 | 0 | 0 | 6050 |
Statistics of Genome Assembly
| Genome size (bp) | 6,228,879 |
| Chromosomes, organellas and plasmids sequnece No. | 11 |
| Genome sequence No. | 11 |
| GC content | 63 |
| Scaffold sequence No. | 11 |
| Scaffold L50 | 1 |
| Scaffold N50 (bp) | 4,249,857 |
| Scaffold N75 (bp) | 989,120 |
| Scaffold N90 (bp) | 520,614 |
| Unique components No. | 11 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 0 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5855 | 55 | 9 | asse0 | 166 | 3 | 6088 |