- Scientific Name
- Hevea brasiliensis
- Common Names
- jebe, Para rubber tree, siringa; rubber tree;
- Bioproject
- PRJNA945562
- Biosample
- SAMN33788361
- Accession No.
- GCA_030052815.1
- RefSeq Accession No.
- GCF_030052815.1
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Chinese Academy of Tropical Agricultural Sciences
- Released Date
- 2023-10-17
- NCBI Released Date
- 2023-05-22
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_030052815.1 | GCF_030052815.1 | different | ASM3005281v1 | Draft genome in scaffold level | 2023-05-22 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,876,490,218 |
| Chromosomes, organellas and plasmids sequnece No. | 18 |
| Genome sequence No. | 754 |
| GC content | 34.5 |
| Scaffold sequence No. | 754 |
| Scaffold L50 | 9 |
| Scaffold N50 (bp) | 101,662,298 |
| Scaffold N75 (bp) | 91,662,903 |
| Scaffold N90 (bp) | 59,093,531 |
| Contig sequence No. | 2,181 |
| Contig L50 | 147 |
| Contig N50 (bp) | 3,231,751 |
| Unique components No. | 754 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 1,427 |
| Ns gap sequence region length (bp) | 156,175,886 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 35316 | 0 | 0 | 0 | 0 | 0 | 35316 |
Statistics of Genome Assembly
| Genome size (bp) | 1,876,651,409 |
| Chromosomes, organellas and plasmids sequnece No. | 19 |
| Genome sequence No. | 755 |
| GC content | 34.5 |
| Scaffold sequence No. | 755 |
| Scaffold L50 | 9 |
| Scaffold N50 (bp) | 101,662,298 |
| Scaffold N75 (bp) | 91,662,903 |
| Scaffold N90 (bp) | 59,093,531 |
| Contig sequence No. | 2,182 |
| Contig L50 | 147 |
| Contig N50 (bp) | 3,231,751 |
| Unique components No. | 755 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 1,427 |
| Ns gap sequence region length (bp) | 156,175,886 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 36705 | 671 | 209 | asse7824 | 4787 | 0 | 50196 |