- Scientific Name
- Solanum lycopersicum
- Common Names
- tomato; Lycopersicon esculentum, Lycopersicon esculentum var. esculentum, Solanum esculentum, Solanum lycopersicum var. humboldtii
- Bioproject
- PRJDB6546
- Biosample
- SAMD00106495
- Accession No.
- GCA_030162295.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Kazusa DNA Research Institute
- Released Date
- 2023-11-12
- NCBI Released Date
- 2023-04-05
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_030162295.1 | - | - | SLM_r1.2 | Draft genome in chromosome level | 2023-04-05 | DNA |
Statistics of Genome Assembly
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Contig L50 | 1,820 |
| Contig N50 (bp) | 121,927 |
| Contig sequence No. | 21,081 |
| Gaps No. between scaffolds | 0 |
| GC content | 34.5 |
| Genome sequence No. | 165 |
| Genome size (bp) | 795,682,631 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 20,916 |
| Ns gap sequence region length (bp) | 13,980,255 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 67,510,114 |
| Scaffold N75 (bp) | 64,756,891 |
| Scaffold N90 (bp) | 54,804,935 |
| Scaffold sequence No. | 165 |
| Unique components No. | 165 |