- Scientific Name
- Salmonella enterica subsp. enterica serovar Typhimurium
- Common Names
- Bacillus typhimurium, Salmonella choleraesuis serotype typhimurium, Salmonella enterica 1, 4, 5, 12, :i:1, 2, Salmonella enterica serotype Typhimurium, Salmonella enterica serovar Typhimurium, Salmonella enterica ser. typhimurium, Salmonella enterica subsp. enterica serovar 1, 4, 5, 12:i:1, 2, Salmonella typhi-murium, Salmonella typhimurium
- Bioproject
- PRJNA186035
- Biosample
- SAMN03941136
- Accession No.
- GCA_001588275.1
- RefSeq Accession No.
- GCF_001588275.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Center for Food Safety and Applied Nutrition
- Released Date
- 2025-04-30
- NCBI Released Date
- 2016-03-11
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001588275.1 | GCF_001588275.1 | identical | CFSAN033904_01.0 | Complete genome | 2016-03-11 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,773,998 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 233 |
| GC content | 52 |
| Contig sequence No. | 233 |
| Contig L50 | 7 |
| Contig N50 (bp) | 223,165 |
| Unique components No. | 233 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 0 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4499 | 70 | 22 | 24 | 41 | 1 | 4657 |
Statistics of Genome Assembly
| Genome size (bp) | 4,773,998 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 233 |
| GC content | 52 |
| Contig sequence No. | 233 |
| Contig L50 | 7 |
| Contig N50 (bp) | 223,165 |
| Unique components No. | 233 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 0 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4432 | 69 | 23 | asse11 | 152 | 3 | 4690 |