- Scientific Name
- Raphanus sativus
- Common Names
- radish;
- Bioproject
- PRJEB37015
- Biosample
- SAMEA114392495
- Accession No.
- GCA_963506615.2
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Hubei Academy of Agricultural Sciences
- Released Date
- 2023-11-17
- NCBI Released Date
- 2023-10-06
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_963506615.2 | - | - | Genome_and_annotation | Draft genome in scaffold level | 2023-10-06 | DNA GFF RNA |
| GCA_963506615.1 | - | - | cds | Complete genome | 2023-09-21 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 409,895,559 |
| Chromosomes, organellas and plasmids sequnece No. | 9 |
| Genome sequence No. | 210 |
| GC content | 36 |
| Scaffold sequence No. | 210 |
| Scaffold L50 | 5 |
| Scaffold N50 (bp) | 43,617,977 |
| Scaffold N75 (bp) | 33,162,177 |
| Scaffold N90 (bp) | 28,894,300 |
| Contig sequence No. | 1,240 |
| Contig L50 | 12 |
| Contig N50 (bp) | 9,259,393 |
| Unique components No. | 210 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 1,030 |
| Ns gap sequence region length (bp) | 103,000 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 0 | 0 | 0 | 0 | 0 | 39366 | 39366 |