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  • Salmonella enterica subsp. enterica serovar Typhimurium
  • ASM202979v1
    • Scientific Name
    Salmonella enterica subsp. enterica serovar Typhimurium
    Common Names
    Bacillus typhimurium, Salmonella choleraesuis serotype typhimurium, Salmonella enterica 1, 4, 5, 12, :i:1, 2, Salmonella enterica serotype Typhimurium, Salmonella enterica serovar Typhimurium, Salmonella enterica ser. typhimurium, Salmonella enterica subsp. enterica serovar 1, 4, 5, 12:i:1, 2, Salmonella typhi-murium, Salmonella typhimurium
    Bioproject
    PRJNA203445
    Biosample
    SAMN06448814
    Accession No.
    GCA_002029795.1
    RefSeq Accession No.
    GCF_002029795.1
    RefSeq vs GenBank similarity
    identical
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    University of California at Davis
    Released Date
    2023-12-07
    NCBI Released Date
    2017-03-16
    Assembly Level
    Draft genome in scaffold level
    Genome Representation
    Full Genome
    Download
    DNA GFF RNA CDS Protein
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_002029795.1 GCF_002029795.1 identical ASM202979v1 Draft genome in chromosome level 2017-03-16 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 4,893,048
    Chromosomes, organellas and plasmids sequnece No. 0
    Genome sequence No. 61
    GC content 52
    Scaffold sequence No. 61
    Scaffold L50 8
    Scaffold N50 (bp) 222,317
    Scaffold N75 (bp) 109,644
    Scaffold N90 (bp) 60,024
    Contig sequence No. 70
    Contig L50 8
    Contig N50 (bp) 219,594
    Unique components No. 61
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 9
    Ns gap sequence region length (bp) 586
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    Protein trna rrna ncrna Pseudogene Others Total
    Total 4810 69 7 8 119 3 5016

    Statistics of Genome Assembly

    Genome size (bp) 4,893,048
    Chromosomes, organellas and plasmids sequnece No. 0
    Genome sequence No. 61
    GC content 52
    Scaffold sequence No. 61
    Scaffold L50 8
    Scaffold N50 (bp) 222,317
    Scaffold N75 (bp) 109,644
    Scaffold N90 (bp) 60,024
    Contig sequence No. 70
    Contig L50 8
    Contig N50 (bp) 219,594
    Unique components No. 61
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 9
    Ns gap sequence region length (bp) 586
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 4591 70 78 119 3 4798