- Scientific Name
- Oryza sativa tropical japonica subgroup
- Common Names
- Oryza sativa (javanica cultivar-group), Oryza sativa tropical japonica group, Oryza sativa var. javanica, Oryza sativa tropical japonica cultivar-group
- Bioproject
- PRJEB76606
- Biosample
- SAMEA115755040
- Accession No.
- GCA_964197625.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Institut de recherche pour le developpement
- Released Date
- 2025-05-24
- NCBI Released Date
- 2024-07-03
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_964197625.1 | - | - | oscoi1-1 | Draft genome in chromosome level | 2024-07-03 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 377,355,622 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 282 |
| GC content | 44 |
| Scaffold sequence No. | 282 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 30,259,887 |
| Scaffold N75 (bp) | 28,702,892 |
| Scaffold N90 (bp) | 24,061,856 |
| Contig sequence No. | 458 |
| Contig L50 | 17 |
| Contig N50 (bp) | 8,480,222 |
| Unique components No. | 282 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 176 |
| Ns gap sequence region length (bp) | 17,600 |
| Gaps No. between scaffolds | 0 |