- Scientific Name
- Lentinula edodes
- Common Names
- shiitake mushroom; Agaricus edodes, Lentinus edodes
- Bioproject
- PRJNA572461
- Biosample
- SAMN12811716
- Accession No.
- GCA_027887095.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- DOE Joint Genome Institute
- Released Date
- 2023-11-18
- NCBI Released Date
- 2023-01-17
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 37,815,065 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 1,913 |
| GC content | 46 |
| Scaffold sequence No. | 1,913 |
| Scaffold L50 | 170 |
| Scaffold N50 (bp) | 67,859 |
| Scaffold N75 (bp) | 28,604 |
| Scaffold N90 (bp) | 8,373 |
| Contig sequence No. | 1,988 |
| Contig L50 | 170 |
| Contig N50 (bp) | 67,859 |
| Unique components No. | 1,988 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 75 |
| Ns gap sequence region length (bp) | 6,990 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 13370 | 246 | 0 | 0 | 3 | 0 | 13619 |