- Scientific Name
- Pseudomonas savastanoi pv. glycinea
- Common Names
- Pseudomonas syringae glycinea, Pseudomonas syringae (PV. GLYCINEA)
- Bioproject
- PRJNA292453
- Biosample
- SAMN03976413
- Accession No.
- GCA_003701385.1
- RefSeq Accession No.
- GCF_003701385.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- University of Toronto
- Released Date
- 2023-12-12
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_003701385.1 | GCF_003701385.1 | identical | ASM370138v1 | Draft genome in scaffold level | 2018-10-30 | DNA GFF Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,966,883 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 1,012 |
| GC content | 58 |
| Scaffold sequence No. | 1,012 |
| Scaffold L50 | 153 |
| Scaffold N50 (bp) | 12,692 |
| Scaffold N75 (bp) | 6,656 |
| Scaffold N90 (bp) | 3,039 |
| Contig sequence No. | 1,120 |
| Contig L50 | 158 |
| Contig N50 (bp) | 12,216 |
| Unique components No. | 1,012 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 108 |
| Ns gap sequence region length (bp) | 6,001 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5642 | 0 | 0 | 0 | 0 | 0 | 5642 |
Statistics of Genome Assembly
| Genome size (bp) | 5,966,883 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 1,012 |
| GC content | 58 |
| Scaffold sequence No. | 1,012 |
| Scaffold L50 | 153 |
| Scaffold N50 (bp) | 12,692 |
| Scaffold N75 (bp) | 6,656 |
| Scaffold N90 (bp) | 3,039 |
| Contig sequence No. | 1,120 |
| Contig L50 | 158 |
| Contig N50 (bp) | 12,216 |
| Unique components No. | 1,012 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 108 |
| Ns gap sequence region length (bp) | 6,001 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5287 | 31 | 3 | asse1 | 561 | 3 | 5886 |