- Scientific Name
- Solanum lycopersicum
- Common Names
- tomato; Lycopersicon esculentum, Lycopersicon esculentum var. esculentum, Solanum esculentum, Solanum lycopersicum var. humboldtii
- Bioproject
- PRJDB16644
- Biosample
- SAMD00644211
- Accession No.
- GCA_036512215.2
- RefSeq Accession No.
- GCF_036512215.1
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Kazusa DNA Research Institute
- Released Date
- 2025-05-01
- NCBI Released Date
- 2024-09-03
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_036512215.2 | GCF_036512215.1 | different | SLM_r2.1 | Draft genome in scaffold level | 2024-09-03 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_036512215.1 | - | - | ASM3651221v1 | Draft genome in scaffold level | 2023-11-04 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 832,773,323 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 12 |
| GC content | 35 |
| Scaffold sequence No. | 12 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 69,564,429 |
| Scaffold N75 (bp) | 68,473,177 |
| Scaffold N90 (bp) | 62,371,966 |
| Contig sequence No. | 178 |
| Contig L50 | 13 |
| Contig N50 (bp) | 20,171,672 |
| Unique components No. | 12 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 166 |
| Ns gap sequence region length (bp) | 57,769 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 833,375,041 |
| Chromosomes, organellas and plasmids sequnece No. | 14 |
| Genome sequence No. | 14 |
| GC content | 35 |
| Scaffold sequence No. | 14 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 69,564,429 |
| Scaffold N75 (bp) | 68,473,177 |
| Scaffold N90 (bp) | 62,371,966 |
| Contig sequence No. | 180 |
| Contig L50 | 13 |
| Contig N50 (bp) | 20,171,672 |
| Unique components No. | 14 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 166 |
| Ns gap sequence region length (bp) | 57,769 |
| Gaps No. between scaffolds | 0 |