- Scientific Name
- Avicennia rumphiana
- Common Names
- Avicennia marina var. rumphiana
- Bioproject
- PRJNA797928
- Biosample
- SAMN25041401
- Accession No.
- GCA_042140295.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- National Science and Technology Development Agency
- Released Date
- 2025-05-02
- NCBI Released Date
- 2024-09-23
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_042140295.1 | - | - | ASM4214029v1 | Draft genome in chromosome level | 2024-09-23 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 474,789,409 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 14,857 |
| GC content | 34 |
| Scaffold sequence No. | 14,857 |
| Scaffold L50 | 15 |
| Scaffold N50 (bp) | 13,639,888 |
| Scaffold N75 (bp) | 12,026,061 |
| Scaffold N90 (bp) | 10,796,272 |
| Contig sequence No. | 23,202 |
| Contig L50 | 1,079 |
| Contig N50 (bp) | 134,123 |
| Unique components No. | 14,857 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 8,345 |
| Ns gap sequence region length (bp) | 3,008,247 |
| Gaps No. between scaffolds | 0 |