- Scientific Name
- Oryza sativa tropical japonica subgroup
- Common Names
- Oryza sativa (javanica cultivar-group), Oryza sativa tropical japonica group, Oryza sativa var. javanica, Oryza sativa tropical japonica cultivar-group
- Bioproject
- PRJEB81107
- Biosample
- SAMEA117477695
- Accession No.
- GCA_965117735.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Institut de recherche pour le developpement
- Released Date
- 2025-05-01
- NCBI Released Date
- 2025-01-25
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_965117735.1 | - | - | Caiapo | Draft genome in chromosome level | 2025-01-25 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 380,488,984 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 75 |
| GC content | 44 |
| Scaffold sequence No. | 75 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 30,886,822 |
| Scaffold N75 (bp) | 29,108,092 |
| Scaffold N90 (bp) | 24,946,511 |
| Contig sequence No. | 108 |
| Contig L50 | 7 |
| Contig N50 (bp) | 23,444,316 |
| Unique components No. | 75 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 33 |
| Ns gap sequence region length (bp) | 3,300 |
| Gaps No. between scaffolds | 0 |