- Scientific Name
- Drosophila melanogaster
- Common Names
- fruit fly; Sophophora melanogaster
- Bioproject
- PRJNA13812
- Biosample
- SAMN02803731
- Accession No.
- GCA_000001215.4
- RefSeq Accession No.
- GCF_000001215.4
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics
- Released Date
- 2024-09-01
- NCBI Released Date
- 2014-08-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000001215.4 | GCF_000001215.4 | identical | Release 6 plus ISO1 MT | Draft genome in scaffold level | 2014-08-01 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 143,726,002 |
| Chromosomes, organellas and plasmids sequnece No. | 8 |
| Genome sequence No. | 1,870 |
| GC content | 42 |
| Scaffold sequence No. | 1,870 |
| Scaffold L50 | 3 |
| Scaffold N50 (bp) | 25,286,936 |
| Scaffold N75 (bp) | 23,542,271 |
| Scaffold N90 (bp) | 23,513,712 |
| Contig sequence No. | 2,442 |
| Contig L50 | 3 |
| Contig N50 (bp) | 21,485,538 |
| Unique components No. | 1,870 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 572 |
| Ns gap sequence region length (bp) | 1,152,978 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 13962 | 312 | 111 | 3138 | 339 | 32 | 17894 |
Statistics of Genome Assembly
| Genome size (bp) | 143,726,002 |
| Chromosomes, organellas and plasmids sequnece No. | 8 |
| Genome sequence No. | 1,870 |
| GC content | 42 |
| Scaffold sequence No. | 1,870 |
| Scaffold L50 | 3 |
| Scaffold N50 (bp) | 25,286,936 |
| Scaffold N75 (bp) | 23,542,271 |
| Scaffold N90 (bp) | 23,513,712 |
| Contig sequence No. | 2,442 |
| Contig L50 | 3 |
| Contig N50 (bp) | 21,485,538 |
| Unique components No. | 1,870 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 572 |
| Ns gap sequence region length (bp) | 1,152,978 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 13962 | 312 | 111 | asse3138 | 339 | 32 | 17894 |