- Scientific Name
- Haemaphysalis longicornis
- Common Names
- longhorned tick;
- Bioproject
- PRJNA633311
- Biosample
- SAMN14941058
- Accession No.
- GCA_013339765.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- TIGMIC Group
- Released Date
- 2025-05-21
- NCBI Released Date
- 2020-06-16
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_013339765.2 | - | - | BIME_HaeL_1.3 | Draft genome in scaffold level | 2020-06-16 | DNA GFF RNA CDS Protein |
| GCA_013339765.1 | - | - | ASM1333976v1 | Draft genome in scaffold level | 2020-06-16 | DNA GFF RNA CDS Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,554,970,390 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 3,890 |
| GC content | 47.5 |
| Scaffold sequence No. | 3,890 |
| Scaffold L50 | 5 |
| Scaffold N50 (bp) | 204,922,340 |
| Scaffold N75 (bp) | 147,437,226 |
| Scaffold N90 (bp) | 1,238,896 |
| Contig sequence No. | 9,013 |
| Contig L50 | 709 |
| Contig N50 (bp) | 740,000 |
| Unique components No. | 3,890 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 5,123 |
| Ns gap sequence region length (bp) | 512,225 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 25652 | 0 | 0 | 0 | 0 | 0 | 25652 |