- Scientific Name
- Bursaphelenchus xylophilus
- Common Names
- pine wilt nematode, pinewood nematode; pine wood nematode; Aphelenchoides xylophilus
- Bioproject
- PRJEB40022
- Biosample
- SAMEA7232845
- Accession No.
- GCA_904066235.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- University of Miyazaki
- Released Date
- 2025-05-21
- NCBI Released Date
- 2020-09-02
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_904066235.2 | - | - | BXYJv5 | Draft genome in chromosome level | 2021-08-20 | DNA GFF RNA CDS Protein |
| GCA_904066235.1 | - | - | BXYV3 | Draft genome in chromosome level | 2020-09-02 | DNA GFF RNA CDS Protein |
Statistics of Genome Assembly
| Genome size (bp) | 76,763,662 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 76 |
| GC content | 40.5 |
| Scaffold sequence No. | 76 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 3,813,627 |
| Scaffold N75 (bp) | 1,418,576 |
| Scaffold N90 (bp) | 924,513 |
| Contig sequence No. | 77 |
| Contig L50 | 7 |
| Contig N50 (bp) | 2,720,854 |
| Unique components No. | 76 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 1 |
| Ns gap sequence region length (bp) | 30 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 15961 | 0 | 0 | 0 | 27 | 0 | 15988 |