- Scientific Name
- Aphis gossypii
- Common Names
- melon aphid; cotton aphid;
- Bioproject
- PRJEB47895
- Biosample
- SAMEA10332731
- Accession No.
- GCA_917880025.3
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- ROTHAMSTED RESEARCH
- Released Date
- 2025-05-22
- NCBI Released Date
- 2022-09-13
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_917880025.4 | - | - | PGI_APHIGO_v101 | Draft genome in scaffold level | 2022-10-18 | DNA GFF RNA CDS Protein |
| GCA_917880025.3 | - | - | PGI_APHIGO_v100 | Draft genome in scaffold level | 2022-09-13 | DNA GFF RNA CDS Protein |
| GCA_917880025.1 | - | - | PGI_APHIGO_v1 | Draft genome in chromosome level | 2022-09-02 | DNA GFF RNA CDS Protein |
Statistics of Genome Assembly
| Genome size (bp) | 325,719,615 |
| Chromosomes, organellas and plasmids sequnece No. | 4 |
| Genome sequence No. | 14 |
| GC content | 27.5 |
| Scaffold sequence No. | 14 |
| Scaffold L50 | 2 |
| Scaffold N50 (bp) | 89,130,466 |
| Scaffold N75 (bp) | 55,002,648 |
| Scaffold N90 (bp) | 55,002,648 |
| Contig sequence No. | 651 |
| Contig L50 | 22 |
| Contig N50 (bp) | 4,181,269 |
| Unique components No. | 14 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 637 |
| Ns gap sequence region length (bp) | 321,061 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 12229 | 0 | 0 | 0 | 0 | 76 | 12305 |