- Scientific Name
- Oryza sativa Indica Group
- Common Names
- Indian rice, Indica rice; long-grained rice; Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica
- Bioproject
- PRJNA302542
- Biosample
- SAMN04274564
- Accession No.
- GCA_001623345.2
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Huazhong Agricultural University
- Released Date
- 2025-05-21
- NCBI Released Date
- 2018-10-23
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001623345.3 | - | - | ZS97RS3 | Draft genome in contig level | 2020-12-21 | DNA |
| GCA_001623345.2 | - | - | ZS97RS2 | Draft genome in scaffold level | 2018-10-23 | DNA |
| GCA_001623345.1 | - | - | ZS97RS1 | Draft genome in scaffold level | 2016-04-19 | DNA GFF |
Statistics of Genome Assembly
| Genome size (bp) | 387,326,385 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 12 |
| GC content | 43.5 |
| Scaffold sequence No. | 20 |
| Scaffold L50 | 7 |
| Scaffold N50 (bp) | 25,683,510 |
| Scaffold N75 (bp) | 18,161,357 |
| Scaffold N90 (bp) | 12,369,709 |
| Contig sequence No. | 20 |
| Contig L50 | 7 |
| Contig N50 (bp) | 25,683,510 |
| Unique components No. | 20 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 1,400 |
| Gaps No. between scaffolds | 14 |