- Scientific Name
- Bos taurus
- Common Names
- bovine, cow, dairy cow, domestic cattle, domestic cow, ox; cattle; Bos bovis, Bos primigenius taurus
- Bioproject
- PRJNA32899
- Biosample
- SAMN02898106
- Accession No.
- GCA_000003055.5
- RefSeq Accession No.
- GCF_000003055.6
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Center for Bioinformatics and Computational Biology, University of Maryland
- Released Date
- 2024-08-27
- NCBI Released Date
- 2014-11-25
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000003055.5 | GCF_000003055.6 | different | Bos_taurus_UMD_3.1.1 | Draft genome in scaffold level | 2014-11-25 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000003055.4 | GCF_000003055.5 | different | Bos_taurus_UMD_3.1.1 | Draft genome in scaffold level | 2009-12-01 | DNA GFF Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,670,123,310 |
| Chromosomes, organellas and plasmids sequnece No. | 30 |
| Genome sequence No. | 3,143 |
| GC content | 42 |
| Scaffold sequence No. | 6,336 |
| Scaffold L50 | 107 |
| Scaffold N50 (bp) | 6,380,747 |
| Scaffold N75 (bp) | 3,266,626 |
| Scaffold N90 (bp) | 1,419,586 |
| Contig sequence No. | 75,617 |
| Contig L50 | 7,930 |
| Contig N50 (bp) | 96,955 |
| Unique components No. | 75,597 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 69,281 |
| Ns gap sequence region length (bp) | 20,737,887 |
| Gaps No. between scaffolds | 3,193 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 20562 | 0 | 0 | 649 | 5038 | 161 | 26410 |