- Scientific Name
- Ailuropoda melanoleuca
- Common Names
- giant panda;
- Bioproject
- PRJNA38683
- Biosample
- SAMN00008160
- Accession No.
- GCA_000004335.1
- RefSeq Accession No.
- GCF_000004335.2
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Beijing Genomics Institute, Shenzhen
- Released Date
- 2023-12-11
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000004335.1 | GCF_000004335.1 | identical | AilMel_1.0 | Draft genome in scaffold level | 2009-12-15 | DNA GFF RNA Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
| GCA_000004335.1 | GCF_000004335.2 | different | AilMel_1.0 | Draft genome in scaffold level | 2009-12-15 | DNA GFF RNA Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,299,492,210 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 81,466 |
| Scaffold sequence No. | 81,466 |
| Scaffold L50 | 521 |
| Scaffold N50 (bp) | 1,281,781 |
| Scaffold N75 (bp) | 666,580 |
| Scaffold N90 (bp) | 312,670 |
| Contig sequence No. | 200,592 |
| Contig L50 | 16,105 |
| Contig N50 (bp) | 39,886 |
| Unique components No. | 200,592 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 119,126 |
| Ns gap sequence region length (bp) | 54,196,184 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 17538 | 391 | 249 | 808 | 3600 | 0 | 22586 |