- Scientific Name
- Marmota marmota marmota
- Common Names
- Alpine marmot;
- Bioproject
- PRJEB8272
- Biosample
- SAMEA3214822
- Accession No.
- GCA_001458135.2
- RefSeq Accession No.
- GCF_001458135.2
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- MRC NATIONAL INSTITUTE FOR MEDICAL RESEARCH
- Released Date
- 2023-11-08
- NCBI Released Date
- 2019-12-18
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001458135.2 | GCF_001458135.2 | identical | marMar | Draft genome in chromosome level | 2019-12-18 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_001458135.1 | GCF_001458135.1 | identical | marMar2.1 | Draft genome in chromosome level | 2015-11-20 | DNA GFF RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,506,852,125 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 14,031 |
| Scaffold sequence No. | 14,031 |
| Scaffold L50 | 25 |
| Scaffold N50 (bp) | 31,340,621 |
| Scaffold N75 (bp) | 13,574,534 |
| Scaffold N90 (bp) | 5,215,291 |
| Contig sequence No. | 76,906 |
| Contig L50 | 10,658 |
| Contig N50 (bp) | 66,546 |
| Unique components No. | 14,031 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 62,875 |
| Ns gap sequence region length (bp) | 97,111,865 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 2,506,852,125 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 14,031 |
| GC content | 40 |
| Scaffold sequence No. | 14,031 |
| Scaffold L50 | 25 |
| Scaffold N50 (bp) | 31,340,621 |
| Scaffold N75 (bp) | 13,574,534 |
| Scaffold N90 (bp) | 5,215,291 |
| Contig sequence No. | 76,906 |
| Contig L50 | 10,658 |
| Contig N50 (bp) | 66,546 |
| Unique components No. | 14,031 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 62,875 |
| Ns gap sequence region length (bp) | 97,111,865 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 21014 | 1199 | 4 | asse7805 | 4360 | 208 | 34590 |