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  • Phacochoerus africanus
  • ROS_Pafr_v1
    • Scientific Name
    Phacochoerus africanus
    Common Names
    warthog; Common warthog;
    Bioproject
    PRJNA656957
    Biosample
    SAMN15809474
    Accession No.
    GCA_016906955.1
    RefSeq Accession No.
    GCF_016906955.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    The Roslin Institute
    Released Date
    2023-12-15
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level Release Date Download Files
    GCA_016906955.1 GCF_016906955.1 different ROS_Pafr_v1 Draft genome in chromosome level 2021-02-19 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 2,435,099,834
    Chromosomes, organellas and plasmids sequnece No. 18
    Genome sequence No. 195
    GC content 42
    Scaffold sequence No. 195
    Scaffold L50 6
    Scaffold N50 (bp) 141,887,063
    Scaffold N75 (bp) 130,274,087
    Scaffold N90 (bp) 78,775,204
    Contig sequence No. 718
    Contig L50 71
    Contig N50 (bp) 10,602,503
    Unique components No. 195
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 523
    Ns gap sequence region length (bp) 9,510,001
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 2,435,083,091
    Chromosomes, organellas and plasmids sequnece No. 17
    Genome sequence No. 194
    GC content 42
    Scaffold sequence No. 194
    Scaffold L50 6
    Scaffold N50 (bp) 141,887,063
    Scaffold N75 (bp) 130,274,087
    Scaffold N90 (bp) 78,775,204
    Contig sequence No. 717
    Contig L50 71
    Contig N50 (bp) 10,602,503
    Unique components No. 194
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 523
    Ns gap sequence region length (bp) 9,510,001
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 20276 480 34177 2889 104 27929