- Scientific Name
- Ailuropoda melanoleuca
- Common Names
- giant panda;
- Bioproject
- PRJNA588422
- Biosample
- SAMN04193337
- Accession No.
- GCA_002007445.3
- RefSeq Accession No.
- GCF_002007445.2
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Institute of Zoology, Chinese Academy of Sciences
- Released Date
- 2024-10-02
- NCBI Released Date
- 2020-04-20
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_002007445.3 | GCF_002007445.2 | different | ASM200744v3 | Draft genome in scaffold level | 2020-04-20 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_002007445.2 | GCF_002007445.1 | different | ASM200744v2 | Draft genome in scaffold level | 2020-04-20 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_002007445.1 | - | - | ASM200744v1 | Draft genome in chromosome level | 2017-02-28 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 2,440,260,518 |
| Chromosomes, organellas and plasmids sequnece No. | 21 |
| Genome sequence No. | 73,513 |
| GC content | 41.5 |
| Scaffold sequence No. | 73,513 |
| Scaffold L50 | 8 |
| Scaffold N50 (bp) | 129,245,720 |
| Scaffold N75 (bp) | 92,459,488 |
| Scaffold N90 (bp) | 38,124,791 |
| Contig sequence No. | 122,819 |
| Contig L50 | 5,332 |
| Contig N50 (bp) | 127,687 |
| Unique components No. | 73,513 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 49,306 |
| Ns gap sequence region length (bp) | 46,690,237 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 2,440,277,323 |
| Chromosomes, organellas and plasmids sequnece No. | 22 |
| Genome sequence No. | 73,514 |
| GC content | 41.5 |
| Scaffold sequence No. | 73,514 |
| Scaffold L50 | 8 |
| Scaffold N50 (bp) | 129,245,720 |
| Scaffold N75 (bp) | 92,459,488 |
| Scaffold N90 (bp) | 38,124,791 |
| Contig sequence No. | 122,820 |
| Contig L50 | 5,332 |
| Contig N50 (bp) | 127,687 |
| Unique components No. | 73,514 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 49,306 |
| Ns gap sequence region length (bp) | 46,690,237 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 20838 | 485 | 14 | asse6252 | 3591 | 156 | 31336 |