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  • Bos taurus
  • ARS-UCD1.3
    • Scientific Name
    Bos taurus
    Common Names
    bovine, cow, dairy cow, domestic cattle, domestic cow, ox; cattle; Bos bovis, Bos primigenius taurus
    Bioproject
    PRJNA391427
    Biosample
    SAMN03145444
    Accession No.
    GCA_002263795.3
    RefSeq Accession No.
    GCF_002263795.2
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    USDA ARS
    Released Date
    2023-11-03
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level Release Date Download Files
    GCA_002263795.3 GCF_002263795.2 different ARS-UCD1.3 Draft genome in chromosome level 2018-04-11 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
    GCA_002263795.4 GCF_002263795.3 different ARS-UCD2.0 Draft genome in chromosome level 2023-07-01 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 2,711,209,833
    Chromosomes, organellas and plasmids sequnece No. 31
    Genome sequence No. 1,957
    GC content 42
    Scaffold sequence No. 1,957
    Scaffold L50 12
    Scaffold N50 (bp) 103,308,737
    Scaffold N75 (bp) 69,862,954
    Scaffold N90 (bp) 51,992,305
    Contig sequence No. 2,343
    Contig L50 32
    Contig N50 (bp) 25,896,116
    Unique components No. 1,957
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 386
    Ns gap sequence region length (bp) 28,162
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 2,711,209,831
    Chromosomes, organellas and plasmids sequnece No. 31
    Genome sequence No. 1,957
    GC content 42
    Scaffold sequence No. 1,957
    Scaffold L50 12
    Scaffold N50 (bp) 103,308,737
    Scaffold N75 (bp) 69,862,954
    Scaffold N90 (bp) 51,992,305
    Contig sequence No. 2,343
    Contig L50 32
    Contig N50 (bp) 25,896,116
    Unique components No. 1,957
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 386
    Ns gap sequence region length (bp) 28,162
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 20989 1652 167671 4564 215 35107