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  • Bubalus carabanensis
  • PCC_UOA_SB_1v2
    • Scientific Name
    Bubalus carabanensis
    Common Names
    swamp type water buffalo; carabao; Bubalus arnee carabanensis, Bubalus bubalis carabanesis, Bubalus carabanensis carabanensis
    Bioproject
    PRJNA901059
    Biosample
    SAMN31703457
    Accession No.
    GCA_029407905.2
    RefSeq Accession No.
    GCF_029407905.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    University of Adelaide
    Released Date
    2025-02-07
    NCBI Released Date
    2023-03-31
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_029407905.2 GCF_029407905.1 different PCC_UOA_SB_1v2 Draft genome in scaffold level 2023-03-31 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_029407905.1 - - PCC_UOA_SB_1 Draft genome in scaffold level 2023-03-31 DNA

    Statistics of Genome Assembly

    Genome size (bp) 2,898,508,876
    Chromosomes, organellas and plasmids sequnece No. 25
    Genome sequence No. 116
    GC content 43
    Scaffold sequence No. 116
    Scaffold L50 9
    Scaffold N50 (bp) 121,846,921
    Scaffold N75 (bp) 84,270,603
    Scaffold N90 (bp) 62,850,967
    Contig sequence No. 137
    Contig L50 12
    Contig N50 (bp) 91,172,394
    Unique components No. 116
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 21
    Ns gap sequence region length (bp) 4,200
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 2,898,492,518
    Chromosomes, organellas and plasmids sequnece No. 24
    Genome sequence No. 115
    GC content 43
    Scaffold sequence No. 115
    Scaffold L50 9
    Scaffold N50 (bp) 121,846,921
    Scaffold N75 (bp) 84,270,603
    Scaffold N90 (bp) 62,850,967
    Contig sequence No. 136
    Contig L50 12
    Contig N50 (bp) 91,172,394
    Unique components No. 115
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 21
    Ns gap sequence region length (bp) 4,200
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 21871 2504 18411032 4726 319 40636