- Scientific Name
- Pelodiscus sinensis
- Common Names
- Chinese softshell turtle; Chinese soft-shelled turtle; Trionyx sinensis
- Bioproject
- PRJNA68233
- Biosample
- SAMN02981371
- Accession No.
- GCA_000230535.1
- RefSeq Accession No.
- GCF_000230535.1
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- P. sinensis genome project consortium
- Released Date
- 2023-11-07
- NCBI Released Date
- 2012-07-24
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000230535.1 | GCF_000230535.1 | different | PelSin_1.0 | Draft genome in chromosome level | 2012-07-24 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,202,466,388 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 19,903 |
| Scaffold sequence No. | 19,903 |
| Scaffold L50 | 189 |
| Scaffold N50 (bp) | 3,350,749 |
| Scaffold N75 (bp) | 1,345,953 |
| Scaffold N90 (bp) | 459,078 |
| Contig sequence No. | 205,379 |
| Contig L50 | 28,686 |
| Contig N50 (bp) | 21,993 |
| Unique components No. | 205,379 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 185,476 |
| Ns gap sequence region length (bp) | 95,844,368 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 2,202,483,752 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 19,904 |
| GC content | 44.5 |
| Scaffold sequence No. | 19,904 |
| Scaffold L50 | 189 |
| Scaffold N50 (bp) | 3,350,749 |
| Scaffold N75 (bp) | 1,345,953 |
| Scaffold N90 (bp) | 459,078 |
| Contig sequence No. | 205,380 |
| Contig L50 | 28,686 |
| Contig N50 (bp) | 21,993 |
| Unique components No. | 205,380 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 185,476 |
| Ns gap sequence region length (bp) | 95,844,368 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 19518 | 489 | 3 | asse4271 | 362 | 213 | 24856 |