logo
Advanced

  • Plectropomus leopardus
  • YSFRI_Pleo_2.0
    • Scientific Name
    Plectropomus leopardus
    Common Names
    leopard coral trout; leopard coralgrouper; Holocentrus leopardus
    Bioproject
    PRJNA545594
    Biosample
    SAMN11897347
    Accession No.
    GCA_008729295.2
    RefSeq Accession No.
    GCF_008729295.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences
    Released Date
    2023-12-14
    NCBI Released Date
    2020-05-27
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_008729295.2 GCF_008729295.1 different YSFRI_Pleo_2.0 Draft genome in scaffold level 2020-05-27 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_008729295.1 - - YSFRI_Pleo_1.0 Draft genome in scaffold level 2019-10-07 DNA

    Statistics of Genome Assembly

    Genome size (bp) 895,688,574
    Chromosomes, organellas and plasmids sequnece No. 24
    Genome sequence No. 94,259
    Scaffold sequence No. 94,259
    Scaffold L50 13
    Scaffold N50 (bp) 33,285,428
    Scaffold N75 (bp) 28,520,048
    Scaffold N90 (bp) 4,840
    Contig sequence No. 96,637
    Contig L50 278
    Contig N50 (bp) 897,070
    Unique components No. 94,259
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 2,378
    Ns gap sequence region length (bp) 15,808,974
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 895,705,288
    Chromosomes, organellas and plasmids sequnece No. 25
    Genome sequence No. 94,260
    GC content 39.5
    Scaffold sequence No. 94,260
    Scaffold L50 13
    Scaffold N50 (bp) 33,285,428
    Scaffold N75 (bp) 28,520,048
    Scaffold N90 (bp) 4,840
    Contig sequence No. 96,638
    Contig L50 279
    Contig N50 (bp) 896,103
    Unique components No. 94,260
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 2,378
    Ns gap sequence region length (bp) 15,808,974
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 25802 836 721936 736 91 29473