- Scientific Name
- Anas platyrhynchos
- Common Names
- duck, mallard duck, mallard ducks; mallard; Anas boschas, Anas domesticus, Anas platyrhynchos f. domestica
- Bioproject
- PRJNA636121
- Biosample
- SAMN15588841
- Accession No.
- GCA_015476345.1
- RefSeq Accession No.
- GCF_015476345.1
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Zhejiang University
- Released Date
- 2023-12-14
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_015476345.1 | GCF_015476345.1 | different | ZJU1.0 | Draft genome in chromosome level | 2020-11-23 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,188,516,685 |
| Chromosomes, organellas and plasmids sequnece No. | 33 |
| Genome sequence No. | 755 |
| Scaffold sequence No. | 755 |
| Scaffold L50 | 5 |
| Scaffold N50 (bp) | 76,269,206 |
| Scaffold N75 (bp) | 22,598,276 |
| Scaffold N90 (bp) | 11,966,879 |
| Contig sequence No. | 1,660 |
| Contig L50 | 57 |
| Contig N50 (bp) | 5,679,408 |
| Unique components No. | 755 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 905 |
| Ns gap sequence region length (bp) | 4,230,438 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 1,188,533,289 |
| Chromosomes, organellas and plasmids sequnece No. | 34 |
| Genome sequence No. | 756 |
| GC content | 42.5 |
| Scaffold sequence No. | 756 |
| Scaffold L50 | 5 |
| Scaffold N50 (bp) | 76,269,206 |
| Scaffold N75 (bp) | 22,598,276 |
| Scaffold N90 (bp) | 11,966,879 |
| Contig sequence No. | 1,661 |
| Contig L50 | 57 |
| Contig N50 (bp) | 5,679,408 |
| Unique components No. | 756 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 905 |
| Ns gap sequence region length (bp) | 4,230,438 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 16836 | 379 | 35 | asse7537 | 243 | 63 | 25093 |