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  • Protopterus annectens
  • PAN1.0
    • Scientific Name
    Protopterus annectens
    Common Names
    West African lungfish; Lepidosiren annectens, Rhinocryptis annectens
    Bioproject
    PRJNA701604
    Biosample
    SAMN17890435
    Accession No.
    GCA_019279795.1
    RefSeq Accession No.
    GCF_019279795.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Northwestern Polytechnical University
    Released Date
    2025-02-23
    NCBI Released Date
    2021-07-20
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_019279795.1 GCF_019279795.1 different PAN1.0 Draft genome in scaffold level 2021-07-20 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 40,054,324,612
    Chromosomes, organellas and plasmids sequnece No. 27
    Genome sequence No. 12,667
    GC content 40
    Scaffold sequence No. 12,667
    Scaffold L50 11
    Scaffold N50 (bp) 1,974,114,035
    Scaffold N75 (bp) 1,371,727,335
    Scaffold N90 (bp) 863,342,500
    Contig sequence No. 74,227
    Contig L50 6,864
    Contig N50 (bp) 1,603,140
    Unique components No. 12,667
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 61,560
    Ns gap sequence region length (bp) 993,106,966
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 40,054,341,269
    Chromosomes, organellas and plasmids sequnece No. 28
    Genome sequence No. 12,668
    GC content 40
    Scaffold sequence No. 12,668
    Scaffold L50 11
    Scaffold N50 (bp) 1,974,114,035
    Scaffold N75 (bp) 1,371,727,335
    Scaffold N90 (bp) 863,342,500
    Contig sequence No. 74,228
    Contig L50 6,864
    Contig N50 (bp) 1,603,140
    Unique components No. 12,668
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 61,560
    Ns gap sequence region length (bp) 993,106,966
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 22039 2326 4103614 1966 215 30570