- Scientific Name
- Streptococcus pseudopneumoniae
- Common Names
- -
- Bioproject
- PRJNA528011
- Biosample
- SAMN11166151
- Accession No.
- GCA_005890255.1
- RefSeq Accession No.
- GCF_005890255.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Karolinska Institutet
- Released Date
- 2024-01-03
- NCBI Released Date
- 2019-05-30
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_005890255.1 | GCF_005890255.1 | identical | ASM589025v1 | Draft genome in chromosome level | 2019-05-30 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,226,387 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 117 |
| GC content | 39.5 |
| Scaffold sequence No. | 117 |
| Scaffold L50 | 15 |
| Scaffold N50 (bp) | 54,719 |
| Scaffold N75 (bp) | 20,900 |
| Scaffold N90 (bp) | 12,142 |
| Contig sequence No. | 118 |
| Contig L50 | 15 |
| Contig N50 (bp) | 54,719 |
| Unique components No. | 117 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 1 |
| Ns gap sequence region length (bp) | 22 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 2082 | 45 | 5 | 0 | 253 | 3 | 2388 |
Statistics of Genome Assembly
| Genome size (bp) | 2,226,387 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 117 |
| GC content | 39.5 |
| Scaffold sequence No. | 117 |
| Scaffold L50 | 15 |
| Scaffold N50 (bp) | 54,719 |
| Scaffold N75 (bp) | 20,900 |
| Scaffold N90 (bp) | 12,142 |
| Contig sequence No. | 118 |
| Contig L50 | 15 |
| Contig N50 (bp) | 54,719 |
| Unique components No. | 117 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 1 |
| Ns gap sequence region length (bp) | 22 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 2011 | 45 | 5 | asse0 | 260 | 3 | 2324 |