- Scientific Name
- Nitrosopumilaceae archaeon
- Common Names
- -
- Bioproject
- PRJNA592041
- Biosample
- SAMN14996555
- Accession No.
- GCA_013867205.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- the hong kong university of science and technology
- Released Date
- 2025-04-30
- NCBI Released Date
- 2020-07-28
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_013867205.1 | - | - | ASM1386720v1 | Draft genome in chromosome level | 2020-07-28 | DNA GFF |
Statistics of Genome Assembly
| Genome size (bp) | 1,277,770 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 223 |
| GC content | 32 |
| Scaffold sequence No. | 223 |
| Scaffold L50 | 41 |
| Scaffold N50 (bp) | 7,048 |
| Scaffold N75 (bp) | 4,020 |
| Scaffold N90 (bp) | 2,755 |
| Contig sequence No. | 238 |
| Contig L50 | 44 |
| Contig N50 (bp) | 6,318 |
| Unique components No. | 223 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 15 |
| Ns gap sequence region length (bp) | 1,410 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 1722 | 30 | 1 | 0 | 6 | 2 | 1761 |