- Scientific Name
- Populus euphratica
- Common Names
- Euphrates poplar; Populus diversifolia
- Bioproject
- PRJNA178692
- Biosample
- SAMN02981499
- Accession No.
- GCA_000495115.1
- RefSeq Accession No.
- GCF_000495115.2
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Lanzhou University
- Released Date
- 2024-09-27
- NCBI Released Date
- 2014-08-12
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000495115.1 | GCF_000495115.2 | different | PopEup_1.0 | Draft genome in chromosome level | 2014-08-12 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000495115.1 | GCF_000495115.1 | different | PopEup_1.0 | Draft genome in chromosome level | 2014-08-12 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 495,875,768 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 9,614 |
| GC content | 32 |
| Scaffold sequence No. | 9,614 |
| Scaffold L50 | 203 |
| Scaffold N50 (bp) | 482,846 |
| Scaffold N75 (bp) | 119,817 |
| Scaffold N90 (bp) | 31,774 |
| Contig sequence No. | 32,788 |
| Contig L50 | 3,072 |
| Contig N50 (bp) | 40,472 |
| Unique components No. | 32,788 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 23,174 |
| Ns gap sequence region length (bp) | 23,344,727 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 495,077,684 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 9,502 |
| GC content | 32 |
| Scaffold sequence No. | 9,502 |
| Scaffold L50 | 203 |
| Scaffold N50 (bp) | 482,846 |
| Scaffold N75 (bp) | 120,271 |
| Scaffold N90 (bp) | 32,206 |
| Contig sequence No. | 32,266 |
| Contig L50 | 3,060 |
| Contig N50 (bp) | 40,604 |
| Unique components No. | 32,266 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 22,764 |
| Ns gap sequence region length (bp) | 23,280,799 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 30668 | 660 | 8 | asse3179 | 1819 | 0 | 36334 |