- Scientific Name
- Phaseolus vulgaris
- Common Names
- French bean, kidney bean, string bean;
- Bioproject
- PRJNA41439
- Biosample
- SAMN02981484
- Accession No.
- GCA_000499845.1
- RefSeq Accession No.
- GCF_000499845.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- JGI
- Released Date
- 2023-12-10
- NCBI Released Date
- 2013-11-29
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000499845.2 | GCF_000499845.2 | - | P. vulgaris v2.0 | Draft genome in scaffold level | 2024-04-23 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000499845.1 | GCF_000499845.1 | identical | PhaVulg1_0 | Draft genome in scaffold level | 2013-11-29 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 521,076,696 |
| Chromosomes, organellas and plasmids sequnece No. | 11 |
| Genome sequence No. | 708 |
| GC content | 35 |
| Scaffold sequence No. | 708 |
| Scaffold L50 | 5 |
| Scaffold N50 (bp) | 50,367,376 |
| Scaffold N75 (bp) | 43,275,151 |
| Scaffold N90 (bp) | 37,469,608 |
| Contig sequence No. | 41,568 |
| Contig L50 | 3,305 |
| Contig N50 (bp) | 39,053 |
| Unique components No. | 41,568 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 40,860 |
| Ns gap sequence region length (bp) | 48,622,872 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 28134 | 0 | 0 | 0 | 0 | 0 | 28134 |
Statistics of Genome Assembly
| Genome size (bp) | 521,076,696 |
| Chromosomes, organellas and plasmids sequnece No. | 11 |
| Genome sequence No. | 708 |
| GC content | 35 |
| Scaffold sequence No. | 708 |
| Scaffold L50 | 5 |
| Scaffold N50 (bp) | 50,367,376 |
| Scaffold N75 (bp) | 43,275,151 |
| Scaffold N90 (bp) | 37,469,608 |
| Contig sequence No. | 41,568 |
| Contig L50 | 3,305 |
| Contig N50 (bp) | 39,053 |
| Unique components No. | 41,568 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 40,860 |
| Ns gap sequence region length (bp) | 48,622,872 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 28134 | 0 | 0 | asse0 | 0 | 0 | 28134 |