logo
Advanced

  • Carica papaya
  • Papaya1.0
    • Scientific Name
    Carica papaya
    Common Names
    mamon; papaya;
    Bioproject
    PRJNA20267
    Biosample
    SAMN02953710
    Accession No.
    GCA_000150535.1
    RefSeq Accession No.
    GCF_000150535.2
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    The Papaya Genome Sequencing Consortium
    Released Date
    2023-11-07
    NCBI Released Date
    2008-05-06
    Assembly Level
    Draft genome in scaffold level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_000150535.1 GCF_000150535.2 different Papaya1.0 Draft genome in chromosome level 2008-05-06 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 369,781,828
    Chromosomes, organellas and plasmids sequnece No. 9
    Genome sequence No. 17,764
    Scaffold sequence No. 17,764
    Scaffold L50 91
    Scaffold N50 (bp) 1,089,885
    Scaffold N75 (bp) 194,028
    Scaffold N90 (bp) 8,571
    Contig sequence No. 47,483
    Contig L50 7,109
    Contig N50 (bp) 10,609
    Unique components No. 47,483
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 29,719
    Ns gap sequence region length (bp) 98,048,973
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 370,418,818
    Chromosomes, organellas and plasmids sequnece No. 11
    Genome sequence No. 17,766
    GC content 35.5
    Scaffold sequence No. 17,766
    Scaffold L50 91
    Scaffold N50 (bp) 1,089,885
    Scaffold N75 (bp) 194,028
    Scaffold N90 (bp) 8,585
    Contig sequence No. 47,485
    Contig L50 7,081
    Contig N50 (bp) 10,650
    Unique components No. 47,485
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 29,719
    Ns gap sequence region length (bp) 98,048,973
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 18126 379 111484 332 0 20332