- Scientific Name
- Ziziphus jujuba
- Common Names
- Chinese jujube, zao; common jujube; Rhamnus zizyphus
- Bioproject
- PRJNA251714
- Biosample
- SAMN02918186
- Accession No.
- GCA_000826755.1
- RefSeq Accession No.
- GCF_000826755.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Agricultural University of Hebei
- Released Date
- 2025-01-11
- NCBI Released Date
- 2015-02-06
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000826755.1 | GCF_000826755.1 | identical | ZizJuj_1.1 | Draft genome in scaffold level | 2015-02-06 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 437,753,511 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 4,789 |
| GC content | 33.5 |
| Scaffold sequence No. | 5,897 |
| Scaffold L50 | 426 |
| Scaffold N50 (bp) | 301,045 |
| Scaffold N75 (bp) | 157,557 |
| Scaffold N90 (bp) | 73,568 |
| Contig sequence No. | 28,947 |
| Contig L50 | 3,392 |
| Contig N50 (bp) | 33,947 |
| Unique components No. | 28,947 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 23,050 |
| Ns gap sequence region length (bp) | 20,440,151 |
| Gaps No. between scaffolds | 1,108 |
Statistics of Genome Assembly
| Genome size (bp) | 437,753,511 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 4,789 |
| Scaffold sequence No. | 5,897 |
| Scaffold L50 | 426 |
| Scaffold N50 (bp) | 301,045 |
| Scaffold N75 (bp) | 157,557 |
| Scaffold N90 (bp) | 73,568 |
| Contig sequence No. | 28,947 |
| Contig L50 | 3,392 |
| Contig N50 (bp) | 33,947 |
| Unique components No. | 28,947 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 23,050 |
| Ns gap sequence region length (bp) | 20,440,151 |
| Gaps No. between scaffolds | 1,108 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 30009 | 566 | 104 | asse2826 | 2307 | 1 | 35813 |