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  • Solanum tuberosum
  • SolTub_3.0
    • Scientific Name
    Solanum tuberosum
    Common Names
    potatoes; potato;
    Bioproject
    PRJNA63145
    Biosample
    SAMN02981305
    Accession No.
    GCA_000226075.1
    RefSeq Accession No.
    GCF_000226075.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Potato Genome Sequencing Consortium
    Released Date
    2023-11-15
    NCBI Released Date
    2011-09-19
    Assembly Level
    Draft genome in scaffold level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_000226075.1 GCF_000226075.1 different SolTub_3.0 Draft genome in chromosome level 2011-09-19 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 705,779,115
    Chromosomes, organellas and plasmids sequnece No. 0
    Genome sequence No. 14,853
    Scaffold sequence No. 14,853
    Scaffold L50 160
    Scaffold N50 (bp) 1,344,915
    Scaffold N75 (bp) 664,124
    Scaffold N90 (bp) 280,156
    Contig sequence No. 60,068
    Contig L50 6,191
    Contig N50 (bp) 31,914
    Unique components No. 60,068
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 45,215
    Ns gap sequence region length (bp) 42,644,607
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 705,934,411
    Chromosomes, organellas and plasmids sequnece No. 1
    Genome sequence No. 14,854
    GC content 35
    Scaffold sequence No. 14,854
    Scaffold L50 160
    Scaffold N50 (bp) 1,344,915
    Scaffold N75 (bp) 661,279
    Scaffold N90 (bp) 280,156
    Contig sequence No. 60,069
    Contig L50 6,190
    Contig N50 (bp) 31,933
    Unique components No. 60,069
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 45,215
    Ns gap sequence region length (bp) 42,644,607
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 28417 815 82332 2029 5 33606